Diversity of partial sequence leptin gene (Exon 3) in crossbred cattle compared to GenBank database
نویسندگان
چکیده
Abstract. Ermawati D, Panjono, Bintara S, Hartatik T. 2022. Diversity of partial sequence leptin gene (Exon 3) in crossbred cattle compared to GenBank database. Biodiversitas 23: 5614-5620. Genetic marker method that is often used select Single Polymorphism Nucleotide (SNP). Polymorphisms (SNP) has been found various candidate genes, one which the gene. Leptin a affects reproduction and weight. Therefore, this research aims identify SNP (exon Crossbred by comparison with data. A sample was taken from Klaten Central Java, Indonesia. Afterward, DNA sequencing results were analyzed BioEdit SNP. software for alignment part intron 2, exon 3 3'UTR. The MEGA 11.1.1 program analyze edit genetic distance phylogenetic tree based on result shows nine variations SNPs 3. cattle, Bos taurus, indicus, Hereford, Friesian Holstein Bali, same cluster. HindIII restriction enzyme can be recommended genotyping using PCR RFLP. This provides information so it further association growth reproduction.
منابع مشابه
Novel Single Nucleotide Polymorphisms (SNPs) in Intron 2 and Exon 3 Regions of Leptin Gene in Sumba Ongole Cattle
The bovine leptin (LEP) gene was widely used as a candidate gene for molecular selection to improve productivity traits of cattle. This study was carried out to identify single nucleotide polymorphisms (SNPs) in the LEP gene of Sumba Ongole (SO, Bos indicus) cows using sequencing method. A total of 31 animals were used in this study for analyses. Research showed that total of 16 SNPs w...
متن کاملThe Investigation of Mutations and Comparison of Leptin Gene Pro-Motor in Najdi Cattle with the Database NCBI Sequences
Objective: Identity the genetic aspects and major gene influence on energy balance, milk production, fertility, food safety and consumer are the recent interests of genetic and breeding researchers. Methods: Najdi Cattle is the most prominent breeds in Khuzestan province. To do this plan in Shoushtar Najdi Cattle Station, blood samples were taken from 15 Najdi Cattles. DNA was extracted from wh...
متن کاملThe Investigation of Mutations and Comparison of Leptin Gene Pro-Motor in Najdi Cattle with the Database NCBI Sequences
Objective: Identity the genetic aspects and major gene influence on energy balance, milk production, fertility, food safety and consumer are the recent interests of genetic and breeding researchers. Methods: Najdi Cattle is the most prominent breeds in Khuzestan province. To do this plan in Shoushtar Najdi Cattle Station, blood samples were taken from 15 Najdi Cattles. DNA was extracted from wh...
متن کاملChapter 1: GenBank: The Nucleotide Sequence Database
The GenBank sequence database is an annotated collection of all publicly available nucleotide sequences and their protein translations. This database is produced at National Center for Biotechnology Information (NCBI) as part of an international collaboration with the European Molecular Biology Laboratory (EMBL) Data Library from the European Bioinformatics Institute (EBI) and the DNA Data Bank...
متن کامل1 . GenBank : The Nucleotide Sequence Database
The GenBank sequence database is an annotated collection of all publicly available nucleotide sequences and their protein translations. This database is produced at National Center for Biotechnology Information (NCBI) as part of an international collaboration with the European Molecular Biology Laboratory (EMBL) Data Library from the European Bioinformatics Institute (EBI) and the DNA Data Bank...
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ژورنال
عنوان ژورنال: Biodiversitas
سال: 2022
ISSN: ['1412-033X', '2085-4722']
DOI: https://doi.org/10.13057/biodiv/d231109